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AnnZarro
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AnnZarro
  • Getting started
    • Installation
    • Quickstart
    • Desktop app
  • Tutorials
    • A first tour: one focused cell, one focused gene
    • How similar are these cells really?
    • Which genes respond together?
    • Where does a gene change, and how do two cells differ?
  • User guide
    • Interface
    • Focus and lock
    • Cell plots and gene plots
    • Colour scales
    • Tables and filters
    • Panel sets
    • Share links
    • Export
    • Spatial coordinates
    • Remote datasets
    • Cell subsets
  • Preparing data
    • Slot map: which stored array drives which view
    • Preparing a store
    • Chunking
    • Kompot outputs
    • Pairwise matrices
    • Demo data
    • Showcase store
  • Deployment
    • Deployment modes
    • Personal server over SSH
    • Lab server
    • Login, users and permissions
    • Hosting checklist
  • Reference
    • Command-line interface
    • Configuration
    • HTTP API
    • Deep links
    • Wire format
    • Architecture
    • Performance
    • Troubleshooting
    • Licence
    • Cell subsets for million-cell datasets

Appendix

  • Paper figures
    • Fig. 1 · Focus model, slot map and comparison
    • Fig. 2 · The interface
    • Fig. 3 · Cell by cell
    • Fig. 4 · Gene by gene
    • Fig. 5 · Cells and genes
    • Fig. 6 · Deployment
    • Fig. 7 · What one click costs
  • References

Links

  • GitHub repository
  • Setty Lab
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Preparing data¶

  • Slot map: which stored array drives which view
  • Preparing a store
  • Chunking
  • Kompot outputs
  • Pairwise matrices
  • Demo data
  • Showcase store
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Slot map: which stored array drives which view
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