AnnZarro¶
AnnZarro is a read-only, browser-based viewer for AnnData stored as zarr. It is built around
the matrices that other viewers leave out: cell-by-cell kernels and distances (obsp) and
gene-by-gene similarities (varp), explored one focused cell or gene at a time and linked to
the cell-by-gene layers.
Four linked panels on the demonstration data: a diffusion walk from the focused cell, a differential expression volcano coloured by correlation with the focused gene, the gene’s fold change on the UMAP, and a filtered cell table.¶
Install from PyPI or the desktop app and open your first dataset.
Focus, lock, panels, tables, panel sets, share links and export.
Which slot drives which view, chunking, Kompot outputs and the demonstration data.
Cell similarity beyond the UMAP, gene programmes beyond clusters, and where a gene changes.
Desktop, personal server over SSH, and read-only lab servers.
CLI, configuration, HTTP API, deep links, wire format and architecture.